You are right about vapor shippers, but we always put some liquid in the bottom when we ship. I suggest you don't let your level get that low in your storage tank.
The cost of some of this semen is way to expensive to risk it!
Also don't let your tank set on bare concrete. Put it on a rubber mat or wood block. I have seen the bottom of tanks pin-hole from corrosion with the concrete. You should inspect the bottom of your tank occasionally,and look for any corrosion. If a pin-hole develops into your vacuum chamber, your nitrogen level will drop very, very fast. The vacuum around the nitrogen is why we get such long shelf life with our nitrogen.
When we use to freeze and ship cattle embryos, they where very critical to keep them submerged in the liquid. We would never move or ship embryos in vapor. There is a lot of temperature difference between vapor and liquid, which affected post-thaw success. The reason we get by shipping semen in vapor is you are working with millions of cells. The theory is you can afford to lose 10-20% of semen and still get a good conception rate. But, In the cattle industry we always bred one straw to a cow. I never heard of splitting straws, until I got into the deer industry. I highly recommend keeping your semen, you plan to split multiple times submerged in liquid at all times! Moving, moving, moving semen will affect quality! When you transfer it be quick and don't gawk at the straw. If you need to do a hard inspection of a name or number on a straw, get a styrofoam box [ available at many semen supply companies], fill it with nitrogen, and then do your readings.
Saying this, there is many variables in this industry. I have seen people do everything wrong and still get good conception rates, and other people do everything right and get poor conception rates. But I think if you are careful in how you handle and store your semen , you will have better conception rates.
I have worked with cattle semen for 40 years and frozen cattle embryos for almost 30 years.
Gary Olson